by Lawrence Kesteloot, January 2009

(Also available as an e-book from Amazon.)

After a minute Patrick came back with a small
dusty cardboard box. Dave and I stared as Patrick opened it
and pulled out a network switch, the old kind from the days
when they were made with metal cases. He plugged in the
power supply and carefully straightened out a CAT-5 cable to
hook the switch up to our network. I wanted to yell at him
for being so careful and deliberate at a time like this.
Dave sat next to me and was uncharacteristically still.

I stopped breathing as Patrick struggled to get the plug
lined up with the port. I stared at the front panel lights,
and felt Dave doing the same. My eyes watered. Patrick
pushed the plug in. The front lights immediately lit and
flashed actively. I felt my hands and face flush, and out of
the corner of my eye saw Dave sit up and open his mouth as
if to speak. He then put his face down into his cupped
hands, and threw up.

This is not how we would have reacted three weeks
earlier. Three weeks earlier we had settled down into that
difficult part of a project after the honeymoon ends and you
have to implement the tedious parts of the product, the
parts that were just simple boxes in the design, and seemed
straightforward, but turned out to be tricky for reasons
that are incidental, and therefore uninteresting.

Patrick and Dave had done the design, of course, and had
humored me as I had suggested various ideas which in
retrospect must have been obvious to them. It had been
fascinating to hear them debate design issues. So many of
their arguments were based on intuition rather than reasoned
logic. I had learned more each week than my entire last
semester of school.

I found myself siding more with Dave. Dave Mitchell had a
great laugh. He was on the heavy side and knocked things
over a lot. I liked the insights he had about management and
the process of software development, and he liked to teach
me things. Patrick and Dave had split up the work they had
designed, and they had given me tests to write in
advance of their code being ready.

It had been a quiet day when I heard Dave whisper, “What the
hell?” and put his hands into his hair. I sensed an
opportunity to learn and walked over to his desk. He didn’t
notice. He was quickly switching back to his editor, adding
a line of debug output, compiling, running, shaking his
head, and switching back to add another line elsewhere.

“What’s the matter?”

He waited until the program finished running to answer.
“I can’t figure out this bug. I can’t figure out where this
number is coming from here.” He pointed to a line in this
debug output. Dave and Patrick liked to debug by writing
lines to the console, rather than stepping through with a
debugger, as I liked to do.

“What happens when you step through it in the debugger?”
This was a tease. Dave didn’t know how to use a debugger,
short of displaying the stack trace of a core file.

Dave paused, then brought up the debugger on his program.
I smiled in surprise, then walked him through how to set
breakpoints. We spent the next few hours narrowing down
where, in the mess of his code, Boost, and the system
libraries, this value was coming from.

“Patrick, can you help us here?” This surprised me more
than the debugger. Dave rarely asked Patrick for help.

Patrick came over and Dave explained the situation. “The
program is crashing, and that’s because of this bad
dereference here, but the value is correct here.” Dave pointed
at some code while Patrick’s eyes scanned the screen. Then a
thought occurred to me. Dave was still explaining and I
didn’t want to interrupt. My heart was jumping as I waited
for Dave to take a breath.

“I think it’s a compiler bug,” I said with confidence,
squinting my eyes at the code. Patrick and Dave raced
each other to brush this off.

“Blaming the compiler is a last resort,” said Patrick. “Same
with the standard library. Chances are vastly greater that
your brand-new code has a bug, rather than code being used
by thousands of people.” I nodded wisely, but I felt my
cheeks blush.

Patrick Karlsson often made me feel bad. He never meant to,
I’m sure, but he had a way of arguing in a brutally
straightforward way that made me feel thoughtless and young.
He was taller than Dave and I, and thin. He was quiet,
except when correcting something I had said or code I had
written, but I liked him anyway. I sometimes found his
design decisions questionable and naive. Dave and I liked to
gang up on him.

Patrick was cracking his knuckles. He asked questions about
threads and volatile and aliasing, questions I didn’t
entirely understand but wish I’d thought of. Dave considered
each and said that none of Patrick’s concerns applied in
this case. Patrick pursed his lips to the right, the way he
did when he wasn’t sure the answers he’d been given were
correct, and said, “Hmmm, I don’t know. Weird,” and returned
to his desk.

I was relieved that Patrick hadn’t crushed us with an
obvious solution, and I guessed that Dave felt the same as
he sat back up from his slouch and started typing. “Is there
any way to show the assembly right here where things go

I showed him how to do this, and I wondered if he was giving
my theory a chance. He typed the command and the lines of
C were split apart by dozens of lines of assembly.

“That’s not right,” Dave said, “We got the command wrong.”

“I’m sure that’s right,” I said. I knew the debugger well,
and by “we” he meant me.

“No it’s not, that far too much assembly for this line of
code. And some of these aren’t even legal assembly

“That’s not possible,” said Patrick from his desk.

Dave blinked slowly. “Well, I meant that I’ve never seen
these, they’re not what a compiler outputs, this isn’t the
right place.” He was flustered, and I felt more inexperienced
than ever. Dave got up and said, “I’m burned out, we’ll look
at this again tomorrow.”

He left and I sat down at his computer. The only thing I had
contributed all day was knowledge about the debugger, and
Dave didn’t even think I had gotten that right. I looked at the
assembly on the screen. Some of the instructions were
obvious and some were cryptic. I found an online assembly
reference and started tracing the instructions, keeping
notes about register contents in my notebook.

Dave was right, these instructions made no sense. Not only
did they perform too much work for the corresponding C code,
but they didn’t even make sense internally. But I convinced
myself that this was at least the right section, because a
few of the instructions matched the surrounding C lines.

I focused on one instruction in particular. It was subtracting a
register from itself. That’s not necessarily odd in itself:
it might be an efficient way to set a register to zero. But
this register was then used in other math instructions. The
compiler must have known it’d be zero and optimized it out.
I hesitated, then called Patrick over. I explained what I
had found. He stared at it for a good while, then said,
“That’s not a normal subtraction instruction.”

He was right. I looked it up more carefully, and found that
it was a variation that also subtracted out the carry bit.
This was a way to get the carry bit into a register. I worked
my way backwards to see where the carry was set. The code
got increasingly convoluted, and I repeatedly made
incorrect assumptions that threw me off-course.

I turned around to ask Patrick a question and found an empty
desk. It was nearly midnight. I set the office alarm and
rode my bike home.

I got in late the next morning. I hadn’t slept
well, and it had taken me hours to fall sleep. Each time I
closed my eyes I saw fast-moving assembly instructions in
large bright letters.

I walked straight to Dave’s desk to discuss the previous
night’s investigations, but he wasn’t interested.

“You were right,” he said, “It was a compiler bug. I tweaked
the C code and I’m no longer triggering it. That weird
assembly is gone.”

I was in the awkward position of having to contradict the
compliment. “I don’t know if it’s a bug. The code I saw
wouldn’t have been generated by a bug.”

“It was definitely a compiler bug.” I had worked with Dave
enough to know that the more confidently he spoke, the less
secure he was. But he was tired of being held up by the
problem, and I dropped it.

Dave walked up to my desk with a grin and a cup
from Peet’s Coffee. I thought all coffees tasted fine, but
he was picky, so I pretended to be picky so that I could
spend time with him walking to Peet’s. I felt a bit stung
that he’d gone without me this time.

“You remember that compiler bug from Tuesday?” He grinned
some more. His teeth were yellow from the espresso.


“It happened again this morning. Same file, same problem.
The weird assembly is back. The strange thing is that I
didn’t change the C file.” He was surprisingly mellow about

“Maybe you changed a header file?” I’m brilliant.

“Oh maybe.” He frowned. “Actually, no. Let me check SVN.”

He came back two minutes later. No relevant files had

Patrick walked over. “This is no good. Here it’s a crash,
but it could be something more subtle. In four months our
system will be so complex that a subtle problem will take
weeks to track down. Can you look at the compiler’s
release notes and see if we can upgrade?”

I looked briefly and found what I had expected. We were on
the latest and most stable version of the recommended major
release. It didn’t get more stable than that. I went further
and searched for some permutation of “weird assembly” and
“compiler bug” and found nothing.

I compiled Dave’s code on my computer and disassembled it.
The strange code was there, at the same place it had been
Tuesday. I recognized the subtract-with-carry instruction
and a few others that seemed unusual. I also looked through
the rest of the code. It was striking how the unusual
instructions didn’t appear anywhere else. The rest of the
generated code used instructions you would expect. After
all, when do you ever need to subtract and use the existing
value of the carry bit?

I downloaded the source code of the compiler. I had never
been so overwhelmed. It was a tangled mess of compiler
passes, plug-in frameworks, embedded languages to describe
CPU architectures, and abstraction layers. I went
straight to the files that described the translation from
the abstract syntax tree to the machine’s assembly. I
grepped for the subtract-with-carry. It wasn’t there. I
looked for a few other odd ones. Some were there, most

At lunch I mentioned my findings. The small office we used
had a patio, which, it being Mountain View, was nearly always
usable. Friday was Togo’s day. I preferred Subway, but Dave
hated the bread.

“That’s super weird,” said Patrick, frowning at the table.
He said “super” a lot. I think it’s a California thing.
“Which other ones weren’t in the translation file?”

“I don’t remember,” I said. “A few more that involved the
carry bit. Some vector instructions.”

Patrick looked up. “That compiler doesn’t do vectorization.”

“That’s what I just said.”

“Either the instruction was generated by mistake or you’re
disassembling non-code.” He was still frowning.

Dave cut in. “It’s definitely code. This is what’s causing
our bug. It’s being executed.”

“And it’s not generated by mistake,” I added. “It’s a math
instruction, but I don’t think it’s being used for math.
It’s not nonsense.”

“Neat.” We had finally hooked Patrick. After lunch he and I
sat down at my desk and walked through the part of the code
I knew best. I showed him how although the instructions were
obscure and strangely used, they did make sense, all
together. There was a deliberate flow of data.

“Let’s look for a backward jump instruction,” he said.


“The target of such a jump may be the top of a loop. It’s a
good place to start the analysis.”

“You’re actually going to figure out what this code is

“Oh yeah.” He smiled and his eyes lit up.

It took us the rest of the afternoon to pick through the
convoluted jump targets and decode four consecutive
instructions. That snippet, it turns out, was finding the
sign of an integer. Anyone else would have done a simple
comparison and a jump to set the output register to -1, 0,
or 1, but the four instructions were a mess of instructions
that all either set the carry bit as a side-effect, or used
it in an unorthodox way.

“You know,” said Patrick, “this isn’t even the interesting
part. I want to know how this code gets in here. You said
these instructions weren’t in the translation file?”

“That’s right.”

“They must be elsewhere. Let’s grep the source for both the
symbolic version and the op-code.”

I did a recursive grep and it came up empty. I didn’t know
what to try next.

“Try the binary,” said Patrick.

“What binary?”

“The binary of the compiler.”

I grepped for the name of the assembly instruction and found
nothing, but looking for the op-code turned up hundreds of

“Interesting,” I said, “they’re not generating individual
instructions, they’re dumping chunks of pre-built code.”


“I don’t know why.”

“I mean, why do you say that?”

“Because these op-codes are all together. It’s not a look-up

“Maybe it’s code,” he said after a second.

I disassembled the whole compiler and looked for a few of
the suspicious instructions, and found large sections that
looked like the obscure code we had been tracing all

“The compiler is infected!” I said. “No wonder we couldn’t
find it in its source code.”

“Okay, let’s start by recompiling the compiler,” said
Patrick. “I’ll poke around the Web to see if anyone’s seen
this before. When you’re done with the compiler, recompile
all our own code and see if Dave’s bug is gone.”

The compiler took two hours to recompile, not including the
time I spent learning the convoluted build process.
Meanwhile, Patrick found nothing online. I rebuilt our
source tree and ran the tests. They failed, in the same

“Maybe the bug was due to something else after all?” I
suggested when Patrick walked over.

“Disassemble the compiler again,” he said.

I did, and the foreign codes were still there.

“That can’t be,” I said. “This is a fresh build of the
official sources.”

“They must have gotten infected. Perhaps someone broke into
the download site and replaced them with modified sources.”

“I would love to see that code,” I said, and opened
my editor to a file in the compiler.

“That’s going to take you forever,” Patrick said. “Put a
breakpoint in write(), with a condition of the string
containing this op-code.”

And this from the guy who pretends not to like debuggers!
Setting the condition was not easy, and there were many false
positives, but the following Monday morning I hit the
write() that outputs the suspicious code. I popped up to the C
code. It was a generic routine to output a buffer. I worked
backwards to the code that had filled it, and it was all
straightforward loops based on the translation table, which
I knew was clean.

In desperation, I started paging through every source file of the
compiler looking for any code that might be
responsible. Much of it was manipulating the abstract syntax
tree. Then it occurred to me that the hack couldn’t be
there, since the back-end translation table was clean. The
hack must be in the back-end itself. In fact, it would have
to be after register assignment. This narrowed down the
search considerably, and I spent an hour looking through
these files before it was time for lunch.

Monday was pho day. We always went to Pho World, which was so low-rent it
didn’t even have a menu, but it was a delicious way to spend four dollars.

“Eye of round, no tripe, no cilantro,” said Dave to the
little man, and we all followed suit. I don’t know what cut
“eye of round” is but I know it’s safe.

“So I couldn’t find it,” I said, “either backward from the
breakpoint or forward from the code.”

“Are you still debugging that?” said Dave.

“We have to,” said Patrick. “We can’t build a product on a
foundation like this.”

“It’s just so odd that the C source would be clean but the
assembly have these weird op-codes,” I said.

“I thought you had tracked it down to the compiler,” said

“I don’t mean in your code, I mean in the compiler itself.”

“The compiler could be responsible for that too.”

“No, I checked the code.”

“But the code is compiled by the compiler.”

I didn’t understand what Dave was saying, but Patrick had
looked up and seemed on the verge of an insight. I waited
for the lucid explanation.

“So the compiler detects and modifies your program, for
reasons still unknown, but also detects and modifies itself
when compiled.”

“Right,” said Dave with a grin, squirting brown sauce in his
soup and splattering some of it onto the table.

“How would that work?” Patrick said, now in full form. “A
hacker adds this code to the compiler and distributes it to
everyone. The code detects that it’s compiling the compiler
and adds itself back into the binary. One revision
later the hacker removes the code from the official source
distribution. The hack then perpetuates itself forever, with
no trace in the source.”

“And what’s the purpose?” I said. I was skeptical that code
could detect and insert itself so flawlessly across multiple

“I don’t know, we didn’t get far enough into the analysis of
Dave’s code. The obvious thing would be some kind of
password validation code, modified to always accept some
back-door password.”

I wish he wouldn’t say that such things are obvious.

“So let’s go back to an old version of the compiler,” said

“You mean the binary of an old version. The source
won’t help us. I don’t think we have binaries around. We
don’t know how far back this goes.”

“How about this,” I said, trying to be helpful, “I’ll write
a utility that you can run on a binary, and it’ll tell you
if it detects the suspicious use of these op codes.”

“Oh good idea.” I liked Patrick.

It didn’t take long to write this utility. It just ran a
binary through the disassembler, then through a few greps to
find instructions that were definitely not generated by the
compiler. It found the code in Dave’s program, as well as in
the compiler. I set it loose on all executables in the

“Here’s the list,” I said as I walked to Patrick’s desk.
It was three printed pages. He looked through it.

“This is not good. The Java runtime, the Python runtime,
Perl, the compiler, and a bunch of other programs that
probably don’t matter.”

“Why do those runtimes matter?”

“Because if we can’t trust the C compiler, then we have to
write a new one, which isn’t all that hard, but what
language are you going to write it in? Are you going to
trust your new compiler to the hacked Python interpreter?”

“You’re not going to write a new compiler,” said Dave from
his desk. “Don’t get all conspiracy paranoid. It’s probably
just a bug.”

I left Patrick staring at the list and went back to my desk.
I still didn’t have an answer to the question I had asked at
lunch: What’s the purpose of this hack? I had enjoyed
reverse-engineering some of these bits of code, and frankly
I feared that Patrick would ask me to write a C
compiler in assembly, so I put my headphones on and opened
the debugger to the part of the C compiler that looked

Again the over-use of instructions that involve the carry
bit, unusual abuse of vector instructions, and convoluted
and sometimes unnecessary jumps. No compiler would generate
this. This was hand-crafted to be difficult to understand. I
set out to figure out the purpose of this page of code.

Some time later I saw the custodian pick up my trash bin to
empty it. I took off my headphones. Dave and Patrick were
gone. It was ten o’clock. I looked back at the screen of
now-familiar instructions. I had pieced together a rough
idea of what it did, or at least what some of its parts did.
I felt a rush of energy. I was close to an answer. I stayed
until morning.

Patrick sat next to me as I pointed at my screen.
“Here they use the vector instruction to get a sum of
squares, which is just a convoluted way to compare these two
byte arrays.” That was the climax of a ten-minute explanation.

“Wait, so what are they doing?” he asked.

“They’re doing pattern matching.”

“Why all the convoluted crap?”

“Well it’s a fuzzy search, and I guess it’s pretty fast.”

“Yeah but this is the most convoluted Rube-Goldberg way of
doing something I’ve ever seen.”

My shoulders sunk and I fiddled with the mouse. I looked at
my reams of notes. He wasn’t even a bit impressed.

“So, what now?” I asked after several seconds of silence.

“I don’t know, let me catch up on email.” He left for his
desk. I was deflated and my muscles ached. I spent the rest
of the morning browsing feeds and refreshing the live blog
of a MacWorld event.

At lunch Patrick recounted my findings to Dave. He
remembered every detail. Dave grinned and shook his head
with every new complication in the algorithm. I wasn’t
convinced that he was able to follow it all so quickly, and
without any code to look at. I realized, listening to it all
again, that Patrick had been right. This was far too
convoluted a way of doing something relatively simple.

“Have you ever seen those obfuscated programming contests?”
Dave asked when Patrick was almost finished. “This is just
like that.”

“A friend and I competed with each other to write an
obfuscated program in college,” said Patrick. “I don’t know
how he did it, but I started by writing the program
normally, then incrementally made it more difficult to
follow, by renaming variables, inlining expressions, stuff
like that. That process never would have resulted in what I
saw this morning.”

“Well maybe other people do it differently,” said Dave.

“I feel strange about this code,” said Patrick. “I don’t
know how to explain it. It feels cold.”

Dave and I looked at Patrick. He was dissolving wasabi into
his soy sauce. I didn’t interrupt his thought-gathering.

“It’s like those chess programs,” he finally said. “They
don’t have intuition about what will work, or feelings about
the board position, or experience to draw on. They just try
every possible option and pick the best one. This feels like that.
Like someone tried every combination of instructions until
they got code that did what it was supposed to do. There’s
no beauty. The code is ugly and functional. I guess that’s
what I meant by ‘cold’.”

“How does it know what it’s supposed to do?” I asked.

“Well,” said Patrick, “maybe you could just define boundary
cases and run the code to see if the output was right. Code
that works on boundary cases is likely to work for all

“Oh I like that!” said Dave, grinning. “I would love to
specify the outcome and have the compiler write the code for

“Well specifying the outcome precisely enough would be no
easier than just writing the code,” said Patrick, and I felt
my smile fade with Dave’s. I wondered whether a drunk
Patrick would be more fun. Or at least less of a buzz-kill.

“So why would somebody do that, then?” I asked.

Patrick put a roll into his mouth and stared at the center
of the round patio table. “Maybe no one did. Maybe this is
all computers doing this.”

I didn’t know what to say to that. I didn’t think he was

“Okay, there’s this thing called Occam’s Razor,” Dave

“Well what’s your explanation?”

“Um, not self-aware artificially-intelligent robot
overlords infecting my object marshalling code.”

“That’s not an explanation.”

“Have you run an anti-virus scan?” Dave liked to pronounce
it “an-TIV-erus”, like the name of a Roman emperor.

“Does that affect your explanation of why this code looks
this way?” Patrick could be a bit brutal.

Dave exhaled and took the question seriously. It was hard to
refute Patrick’s point. No other explanation made sense. We
had never seen a compiler generate this kind of code, and a
human hand-crafting the assembly would have a hard enough
time writing a self-referential op-code-injecting
future-proof worm without needlessly using arcane
instructions. If anything, using such instructions would
draw attention to the code. In fact it had made it easy for
my script to detect all infected programs on my system.

“Okay so what’s your full explanation?” Dave finally asked.

“I don’t know,” said Patrick, frowning. “Maybe some
artificial intelligence program that ran amok. Oh, or you
know how computer viruses evade virus scanners by modifying
their own code? Maybe it started out that way, with a virus
that was programmed to modify itself while retaining the
same behavior.”

We were all silent for a few minutes. I was trying to see if
this explanation was plausible. It seemed unlikely, but
it would only take a single instance of a program somewhere
going in this direction, and it would grow and propagate
wildly. Half a million new computer viruses are detected
each year. Our brains have no intuition for probabilities
involving such numbers.

A thought occurred to me. “Well wait, this didn’t start in
our lab. We just got pre-built binaries from the official
distribution. Someone must have run into this before. I
can’t believe that the official compiler is inserting
half-broken code into binaries and we’re the first who have

“Oh that’s good,” said Patrick, “I’ll post something after

An hour later I got an email from Patrick with several links
to forums where he had posted our findings and asked if
anyone had ever seen them before. Dave followed up with a link
to the Ask Slashdot post he had just submitted where he
begged fellow Slashdotters to provide an explanation so that
his co-worker wouldn’t force him to write a compiler in
assembly language.

“Oh nice, Dave,” said Patrick, and I couldn’t tell if that
was sarcastic or genuine. Dave gave a half-hearted “Thanks”
that told me he wasn’t sure either.

I spent the afternoon poking through more mystery code and
refreshing the forum posts. On a few we were ignored
completely, but on most we were ridiculed. The mocking on
Slashdot was awful. All comments were +5 funny. They didn’t
seem funny to me. I felt my scratchy chin and remembered my
sleepless night. I rode home in a trance and went straight
to bed.

The next morning I found Patrick looking at my
print-out of infected programs. I walked to his desk and
stood by him.

“What are you looking for?” I asked him.

“A way for us to write a compiler in something other than

“The assembler’s not infected?” asked Dave from his desk.

“It’s not on this list.”

I turned toward my desk. “I’ll double-check it.”

“What about the browser?” asked Dave. “Can we write it in
JavaScript?” He was as desperate as I to avoid assembly.

“Yeah it’s infected,” said Patrick.

Dave leaned back in his chair and covered his face in his
hands. “This is crazy. We can’t be writing a compiler in
assembly. No way.”

“It’s not that awful,” said Patrick. “We’ll spend a
day writing useful low-level routines, and after that
assembly’s not much more painful than C. And the compiler
won’t have an optimizer or anything. I bet it doesn’t even
need to support floating point. We just need to compile the
compiler with it. It only needs to work on a single program.”

“That program took me two hours to compile, though. It’s
pretty complex.”

“Do we have to write the linker too?” asked Dave.

I hadn’t even considered the linker. Evidently neither had
Patrick, who quickly turned to Dave, then turned back to the
print-outs, furiously looking for “ld”.

“It’s not on here. I guess that makes sense, it’s easier to
insert code when compiling,” said Patrick. I didn’t
immediately see why that was.

“Wait, let’s back up,” said Dave. “Last week I was able to
fix my bug by modifying the code enough to avoid triggering
the, um, the hack.” He didn’t know what to call it either.

“But then it came back, without you changing the code,” said

“Yeah, I know, but before we write this thing, let’s at
least try to modify the compiler’s own code to see if we can
get it to generate a clean build.”

Patrick paused to consider. “You could, I guess, but where
would you make the modification? Remember that we think this
was introduced several revisions ago. That means the pattern
recognition is pretty solid. And each test will take you two

“Well I can compile it in the background while we start to
write this thing.”

And so it went. Dave downloaded the compiler’s source,
compiled it, found the obfuscated op-codes, mapped it back
to the source, and hacked at it trying to get a clean build.
I could sense him losing hope as he realized the obfuscated
code was spread throughout the program, not just in a few
isolated cases.

Meanwhile Patrick wrote some basic string and file
manipulation routines in assembly and put together a text
filter that did nothing useful. He wanted to verify that its
binary was clean. It was.

I brushed up on my assembly. At school we had done some in
the operating systems class, adding pre-emptive scheduling.
I remember having an unexpected high from programming the
metal this way. There was something pure and raw about
manipulating registers, about knowing exactly what
was going on. I had felt an intimacy with the processor that
high-level languages had abstracted away.

By afternoon Patrick was ready to give me an assignment,
writing the pre-processor. At first it seemed
straightforward: include files, substitute macros, add
conditionals. But then I thought of expressions in
conditionals, avoiding macro substitutions in strings, and I
started looking for a Dave-like easy work-around.

“Can’t we use the infected one?” I asked. I knew it was on
the list, but I didn’t see how an infected version would
affect us. We could pre-process the entire compiler and
manually look for tampered code. I doubted we’d see any, but
if we did, we could also fix it manually.

Patrick liked that idea. “Okay, you start on that. Modify
the compiler’s build system so it has two steps, one that
pre-processes to temporary files, and another that compiles

The plan had back-fired. My easy work-around became not only
the tedious and difficult modification of the compiler’s
convoluted build system, but then the mindless flipping
through output code side-by-side with the original, looking
for signs of tampering.

Patrick, meanwhile, had started on a simple
recursive-descent parser. I heard him suddenly laugh. He
turned to me and said, “I was about to allocate my first
abstract syntax tree node when I realized that I don’t have

The good thing about that project was that every bit of it
could be as minimal and inefficient as necessary. The only
requirement was that the output be correct. Patrick’s malloc
just grabbed bytes from the heap and never bothered to free

We continued like this for days. Patrick would hand us some
simple assignment, such as implementing a single C library
function, and Dave or I would do it while waiting for a
compile to finish.

Dave was not making progress with his own plan. He played
whack-a-mole with the various segments of code he was trying
to trick into generating benign code, but each success would
cause a regression elsewhere.

Two weeks later our compiler, which had been getting through
an increasing fraction of the original compiler, got through
it all. I ran my analysis program on the result and it was
clean. We compiled the original compiler with itself and the
result was clean. It was two in the afternoon and we had
forgotten lunch in our sprint to the finish line.

“Let’s start a full rebuild of our code and go eat,” said

At lunch my mind was too wired to relax but too
tired to make conversation. Dave was telling a story about
local politics. I just wanted the food to arrive so I’d have
an excuse to stay silent. Finally I found it too painful to
think of anything but our problem.

“You know what bugs me,” I said awkwardly when Dave took a
break. “We’ve never come close to figuring out the
purpose of those modifications.”

Patrick answered immediately, also eager to stop talking
about politics. “If I’m right and this is
machine-instigated, then there doesn’t have to be a

“Why would they do it then?” asked Dave.

“Viruses don’t spread because they have a purpose,” said
Patrick. “They spread because they’re good at spreading.”

“So you think this is a virus?” I asked.

“Well it is in the sense that it spreads.”

“How do you know it spreads?”

Patrick was silent. “It puts stuff into our code,” he said
finally, unsure of his answer.

“It doesn’t put itself into our code,” said Dave. “That
wouldn’t make sense, I wasn’t writing a compiler. That was
just some network code.”

“Well if you’re going to spread, then network code would be
a good routine to infect.”

I felt a bit ashamed that none of us had discussed this
before sinking two weeks into a new compiler. We had been so
eager to get our project back on firm footing that we hadn’t
properly investigated the alien in our system.

“But my network code wasn’t talking to a compiler. I mean,
this is a compiler bug, a compiler virus. I don’t understand
what you think it’s doing.” Dave was getting annoyed.

“I don’t know what it’s doing,” said Patrick. “I wonder if it’s
sending stuff over the network.”

“We could check that with Wireshark,” said Dave, referring to the
program that monitored network activity on a machine.

Suddenly all I wanted to do was go back to the office and try it.
Every muscle ached with the desire to stand up and leave. The
sandwiches arrived and we all immediately wrapped them up and
drove back.

I had already installed Wireshark two months earlier to help
debug a TCP/IP problem Patrick was having, so we went to my
desk. I ran the program and recorded a minute of activity.

“That’s a lot of stuff,” Dave said as the screen filled up
with packets.

“Yeah let’s pick a common one,” said Patrick.

I looked through the list and visually picked one that
seemed to recur. We found that it was ssh, and I remembered
that I had a shell window tailing a log file. I closed it
and recorded another minute.

This time we had fewer packets. We picked through them one
by one. Time synchronization, ARP, Gmail refreshing,
programs checking for upgrades. We added each to the
Wireshark filter once we had convinced ourselves they were

I then did a 10-minute capture. There were a few more
packets, all again innocuous. It’s what we had expected, of
course. Dave mumbled something and walked to the kitchen.

Then I had a thought. I felt chills down my arm while I
frantically searched the papers on my desk, looking for the
printout. Then I found it, the list of infected programs. My
eyes zipped down the list, cursing myself for not sorting it.
Then my stomach squeezed tight as I found it, half-way down
the second page: Wireshark.

Patrick guessed what I was looking for and saw the reaction
on my face when I had found it.

“I guess we can’t trust it,” he said.

“Trust what?” said Dave, coming back with a soda.

“Wireshark,” said Patrick. “It’s infected.”

Dave rolled his eyes. He sat down at his desk and unwrapped
his sandwich.

“Let’s look at the lights on this network switch,” I said. We
each had a small switch on our desk. The light for my port
was flickering every few seconds.

“Shut down all the programs we found earlier,” said Patrick.

I closed the brower, the chat program, various other daemons
and tools. I couldn’t shut everything down; there’s always
something left in the operating system, such as DHCP. But
the flashes were infrequent enough that I could corralate
them with packets found by Wireshark. This was good.
Wireshark couldn’t be hiding packets, we’d have seen them on
the switch’s lights.

Patrick left for his sandwich and I opened mine. I looked at
Dave. He was smiling at us. His smile bothered me.
Just because we’re paranoid doesn’t mean it’s
not true. I had seen enough amazing coding samples in the
previous few weeks to be convinced that something big and
serious was happening under our nose.

No program is useful nowadays without communicating over the
network. I rejected the idea that a virus crafted so
carefully and strangely would restrain its activities to the
local machine when the world was a packet away. Hundreds of
programs on my computer were infected. I refused to believe
they were mute.

Patrick suddenly stood up, nearly kicking his chair to the
floor. He walked into the hallway and came back ten minutes
later with a piece of equipment the size of a small
suitcase. He approached me with it and I shoved everything
on my desk to the side to make space. It was a digital scope
he’d gotten from the hardware engineers in the lab upstairs.

He then reached into his pocket and pulled out a break-out
cable with RJ-45 plugs. He put it between my computer and
the switch. He didn’t know how to use the scope. I brought
up a shell window and generated plenty of traffic for him to
see. Eventually he was able to clearly see all my packets. I
closed the window and we waited, shifting our eyes between
the scope and the network switch’s front panel lights.

It was only a few seconds until the scope flicked with
activity. I had been staring at it and couldn’t be sure that
the switch had shown nothing. I brought up Wireshark to have
a history of the packets.

“Nevermind that,” said Patrick. “You look at the switch and
call out each packet you see. I’ll do that with the scope.”

Dave got up and walked casually to us, standing behind me.

I saw the light flash. “Now”, I said, as Patrick
simultaneously said, “Yes.”

That happened two more times with the words reversed. Then
Patrick said, “Now,” and I had seen nothing. This happened
again a few seconds later. I felt more chills in my arm and
in my legs.

“Whoa,” said Patrick. I looked over and the scope was
showing a long stretch of activity. I looked back at the
switch’s lights, which were dark.

Dave said, “You are not going to tell me that the
switch is infected and hiding packets.”

“It is totally hiding packets,” said Patrick, staring
at the activity on the scope and putting both hands on his

I looked up at Dave. His face was pale. His eyes darted
between the two pieces of equipment. I was paralyzed.

Then Patrick stood erect in his chair, staring at the
wall. This trance lasted only two seconds before he stood up
and ran again into the hallway.

You already know what happened next. He came back with an
old switch, from years earlier, and plugged it in. Its lights
flickered in sync with the scope, to packets censored by
Wireshark and the modern switch.

I was glad for the vomit. It gave me something to do. Dave
left for the bathroom and Patrick and I cleaned up using
paper towels I kept on my desk. But the stench was not
enough to suppress the panic, and my weak arms shook in

We sat in silence at the patio table, our
sandwiches half-eaten in front of us. None of the things I
wanted to say seemed worth saying. I alternately convinced
myself that we were mistaken and that we were doomed. I
wished desperately that Patrick would say something.

The patio gate opened and the mailman walked in. He stopped
by our table, picked out a letter from his bundle, put it on
the table, then continued into the building.

Dave grabbed it. “It’s addressed to both of us,” he said,
glancing up at Patrick. He ripped open the side and pulled
out a letter hand-written on loose-leaf paper. He fumbled
with the sheets for a few seconds, then read the letter aloud.


We found your posts online. For three years we’ve been
waiting for them, scouring the Internet and monitoring

You must know that this has happened before, several times.
The first was four years ago, to our team in Virginia. We
found our binaries modified. We could recompile the code to
clean them, but we found the binaries mysteriously modified
again only a few hours later.

The next case was only a few months later to an unrelated
team in San Diego. Both the binaries and the source had
been modified. The source had to be periodically cleaned up,
because recompilation was not sufficient to solve the

It was a another year until we found the third case, a team in
Spain. The binary was dirty, the source was clean, but
recompiling did not fix the problem. The compiler’s source
code had been modified to insert the strange op-codes.

Each team uncovered the worm’s weakest point and developed a
solution. This weakest point was then patched for the next
attack. Each generation pushed the worm deeper into the system.

Now it’s your turn. Not only has the compiler been modified,
but its source is clean. It infects itself on recompilation.
Our own machines have been infected for nine months this
way. So has the rest of the world’s. You may wonder,
then, why we were eagerly waiting for your post. To explain
this, we must make two observations.

The first is that anyone could have guessed these
weaknesses. It takes a fool to modify a development team’s
binary, expecting it
to not be recompiled. Anyone would have skipped that step,
there’s no need to learn that lesson. Modifying their source
is similarly naive. These modifications are technically very
sophisticated. Who would be so technically advanced but so
socially naive?

Machines. It wasn’t until the third attack that we came up
with this hypothesis, and now we’re convinced. If you’ve
studied the modified op-codes, you may also have come to the
same conclusion. The op-codes were clearly generated by
trial-and-error, by generating a random sequence and testing
to see if it behaved correctly. Only a machine would do

The second observation is that, all these years, the worm
has been widely spread but innocuous to infected programs.
Yet it was not innocuous to these four teams. They were
unable to finish their projects. They tried simple
work-arounds, but these work-arounds persistently failed.
Only a single team, world-wide, was affected by each
generation of the worm.

This makes sense. Computers cannot empathize with humans.
They can’t predict what we’re going to do when we run into a
problem. The machines must have known that their worm has
weaknesses, but they didn’t know what these weaknesses were.
They forced a small team to be affected by the worm until
that team found the weakest point and circumvented the worm.
The machines then patched the weakness and tried again.

This is a large-scale version of what they do when they’re
generating op-codes. They try different things until one
works, instead of planning it out, as a human would. It’s a
typically effective way to solve a problem, when you’re made
of silicon.

By now you’ve presumably written a new compiler, perhaps in
assembly language, and recompiled everything cleanly. We
expect a few years to pass before we see the next team post
to forums. We can already predict their findings. The
compiler’s binary will be clean. Or rewriting the compiler in
assembly won’t work. The worm will have been pushed deeper,
perhaps into the text editor, the assembler, the file
system, the hard disk interface, or the CPU itself.

Dave couldn’t finish. I don’t think there was much left
of the letter anyway. He put it down in his lap.

We were silent for hours. Eventually Patrick left,
then Dave. The November night came early and cold, but I
couldn’t move.

I replayed our adventure. I analyzed each
step, identified each assumption we had made. The big leap
was the one about machines being responsible. As Carl Sagan
had said, “Extraordinary claims require extraordinary
evidence.” We had no extraordinary evidence. We had no
evidence at all, only the lack of another explanation.

Could this have been done by humans? Humans write computer
viruses all the time. It’s entirely possible that we had
found an everyday virus and had overreacted. The team from
Virginia may just be paranoid lunatics. This was far more
plausible than the theory of machines.

I felt a weight lift as I considered this alternative
explanation. These virus writers might well have written a
program to generate op-codes randomly. They may well have
started simply and, over years, made their attack more
sophisticated, pushing it deeper into the system. Perhaps
the authors are autistic savants.

My mind was blank for many minutes. When my thoughts
returned, I found this new theory even more implausible than
the one about machines. We had no idea what machines could
do, but I could be pretty sure that no human would approach
writing a worm this way. If we could have insight into an
entity’s approach to playing chess, and found that it tried
all possible paths, the only honest theory would be a machine

Furthermore, for practical purposes, it didn’t matter. We
had to tell the world of our findings. We had to stop the
perpetrators before they modified hardware disk interfaces
or the CPU. We were lost if the worm reached such a
low-level substrate of our technology.

I imagined posting online again. I remembered the +5 funny
Slashdot replies. Who should we tell? Intel? The government?
The Virginia team must have tried. Why didn’t anti-virus
programs detect this? I imagined conversations with
officials who would laugh at our theories. I imagined
screaming at them.

I suddenly stood up, clenching my fists and pacing the
enclosed patio. I imagined yelling at people because I
couldn’t imagine yelling at machines. Like most programmers,
I had always spoken anthropomorphically about computers, but
when these computers had finally acted like humans, I
found their nature ephemeral and soulless.

I picked up my sandwich in its wrapper and went inside. I
dumped the sandwich and opened the fridge absent-mindedly. I
stared at the drinks. A happier thought occurred to me. None
of the code we had analyzed seemed malicious. Other than
occasionally bothering a team like ours, we had seen no
evidence of malice.

Patrick had been right when he said that a virus doesn’t
spread because it has a purpose, only because it’s good at
spreading. This worm might be a permanent tag-along, like
mitochondria, forging a symbiotic relationship with us. If
we tried to stamp it out, then we may corner it into a
resistant strain that is hostile to us. But this was
unnecessary. Let’s just let it be. It’s unsettling, but

I shut the fridge, put on my jacket, and walked to the alarm
panel. The LCD on the panel reminded me that it, too,
was a computer. Was it infected? Did it know of our new
compiler? Was it going to let me arm it? Were the magnetic
door locks going to let me out of the building?

I pressed the digits for the arming code and heard the
countdown tones. I walked out onto the patio to my bicycle.
They had permitted me to leave. I looked at my bike and
smiled at its mechanical simplicity. I thought of
traffic lights and sewer pumps. I thought of my credit
card. I thought of cars and telephones.

I wanted to sit down. I was vanquished. Taking humanity back
to a pre-computer age was impossible. I was suddenly ashamed
to have participated in our undoing. I was a programmer. I
was a member of the group that had spawned our successors.

I tucked my right pant leg into my sock and unlocked my bike.
With the shame came a strange pride. Not many people can claim to have
created a species, if it can be called that. Sure, lawyers
and doctors and politicians are important. But they’re just
maintaining the current house, not creating the future
inhabitants of Earth.

I rode out of the parking lot into the empty street. I
smelled again the flower scent that I associated so strongly
with Mountain View. I had never looked up its name. There’s
nothing wrong with being a transitional species. Nearly all
species had been, and in the long run we would be one
anyway. We remembered Lucy. We remembered dinosaurs. We
worshiped dinosaurs. The machines would remember us.

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